ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR812
source: miRBase, original name: osa-MIR812n (MI0017254)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGTGCAGCCATGAGTTTCCGTGC miRNA* ACGGAAAATCATGGCTGCACTTAA mismatches: 1 bulges: 0 |
pre-miRNA
CTTAAGTGCAGCCATGAGTTTCCGTGCCCAACTTTATCGTTCGTCTTATTTGAAATTTTTTTATGATTAGTATTTCTATTGTTATTAGATGATAAAACAT
GAATAGTACTTTATGTGTGACTTATGTTTTTATTGTTTTTAAAAAAAATTCAAATAACACAGACGATCAAAGTTGGGCACGGAAAATCATGGCTGCACTT
AAA
dot-bracket secondary structure
.((((((((((((((((.((((((((((((((((((((((..((.(((((((((.((((((((.((.(((((..((((.......))))....(((((((
((.(..(((.....)))..).)))))))))))))).)).)))))))).))))))))).))..))))).))))))))))))))))).))))))))))))))
)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Li T, Li H, Zhang YX, Liu JY, Nucleic Acids Res. [Epub prior to print](2010)., "Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"
CTTAAGTGCAGCCATGAGTTTCCGTGCCCAACTTTATCGTTCGTCTTATTTGAAATTTTTTTATGATTAGTATTTCTATTGTTATTAGATGATAAAACAT
GAATAGTACTTTATGTGTGACTTATGTTTTTATTGTTTTTAAAAAAAATTCAAATAACACAGACGATCAAAGTTGGGCACGGAAAATCATGGCTGCACTT
AAA
dot-bracket secondary structure
.((((((((((((((((.((((((((((((((((((((((..((.(((((((((.((((((((.((.(((((..((((.......))))....(((((((
((.(..(((.....)))..).)))))))))))))).)).)))))))).))))))))).))..))))).))))))))))))))))).))))))))))))))
)).
SIMILARITIES| miRBase osa-MIR812n: 3e-86 PMRD osa-miR812j: 4e-30 microPC miR812: 2e-19 | UniProt no hits RFAM MIR806: 5e-85 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Li T, Li H, Zhang YX, Liu JY, Nucleic Acids Res. [Epub prior to print](2010)., "Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"
