ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR812
source: miRBase, original name: osa-MIR812o (MI0017255)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTGTTCAACGTTTGACTGTC miRNA* CGGTCAAATGTTAGACACGGA mismatches: 3 bulges: 0 |
pre-miRNA
GGTTTTCGTGTTCAACGTTTGACTGTCTATCTTATATGAAAATTTTTTTATTAGTATTTTTATTATTGTTAGATGATAAAACATGAATAATACTTTATGC
ATGACTTATCTTTTTAATTTTTTTCATAATTTTTTTAAATAAAATGAACGGTCAAATGTTAGACACGGAAACT
dot-bracket secondary structure
(((((((((((..(((((((((((((.(((.((((.((((((.........(((((....)))))..((((((.(((((..((((.((((....)))).)
)))..)))))..)))))).............)))))).)))).))).)))))))))))))..)))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Li T, Li H, Zhang YX, Liu JY, Nucleic Acids Res. [Epub prior to print](2010)., "Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"
GGTTTTCGTGTTCAACGTTTGACTGTCTATCTTATATGAAAATTTTTTTATTAGTATTTTTATTATTGTTAGATGATAAAACATGAATAATACTTTATGC
ATGACTTATCTTTTTAATTTTTTTCATAATTTTTTTAAATAAAATGAACGGTCAAATGTTAGACACGGAAACT
dot-bracket secondary structure
(((((((((((..(((((((((((((.(((.((((.((((((.........(((((....)))))..((((((.(((((..((((.((((....)))).)
)))..)))))..)))))).............)))))).)))).))).)))))))))))))..)))))))))))
SIMILARITIES| miRBase osa-MIR812o: 4e-45 PMRD osa-miRf11614-akr: 3e-21 microPC miR812: 4e-17 | UniProt no hits RFAM MIR812: 6e-38 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Li T, Li H, Zhang YX, Liu JY, Nucleic Acids Res. [Epub prior to print](2010)., "Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"
