ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR445
source: miRBase, original name: osa-MIR813 (MI0005238)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGTTATGGAATGGGTTTTACC miRNA* CAAAACCAATTCCATAACCCCT mismatches: 3 bulges: 0 |
pre-miRNA
TAAACGTAGATTACTGACAAAACCAATTCCATAACCCCTAGGCTATTTTGCAAGACGAATCTAATGATGTATATTAATCCATGATTAGCGACCAATTACT
GTAGCGTCACTATAATAAATCATGGATTAATATACCTCATTAGATTCGTCTCGCAAAATAGCCTAGGGGTTATGGAATGGGTTTTACCACTAATCTATGT
TTA
dot-bracket secondary structure
(((((((((((((.((..((((((.((((((((((((((((((((((((((.(((((((((((((((.((((((((((((((((((((.((((.((....
)).).))).)))......))))))))))))))))).))))))))))))))).)))))))))))))))))))))))))).))))))..)).))))))))))
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
TAAACGTAGATTACTGACAAAACCAATTCCATAACCCCTAGGCTATTTTGCAAGACGAATCTAATGATGTATATTAATCCATGATTAGCGACCAATTACT
GTAGCGTCACTATAATAAATCATGGATTAATATACCTCATTAGATTCGTCTCGCAAAATAGCCTAGGGGTTATGGAATGGGTTTTACCACTAATCTATGT
TTA
dot-bracket secondary structure
(((((((((((((.((..((((((.((((((((((((((((((((((((((.(((((((((((((((.((((((((((((((((((((.((((.((....
)).).))).)))......))))))))))))))))).))))))))))))))).)))))))))))))))))))))))))).))))))..)).))))))))))
)))
SIMILARITIES| miRBase no hits PMRD osa-miR813: 4e-113 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miR813 from PMRD (MNEST049058) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
