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ABOUT THIS RECORD

ID: MNEST042157
species: Oryza sativa
miRNA family: MIR814
source: miRBase, original name: osa-MIR814b (MI0005240)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CACTTCATAGTACAACGAATCT

miRNA*
ATTCGTTGTACTATAAAGTGTC

mismatches: 1
bulges: 0

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pre-miRNA
ACCGGACGAGACACTTCATAGTACAACGAATCTGGACATGAAGATTCGTTGTACTATAAAGTGTCTCGTCTGGT

dot-bracket secondary structure
((((((((((((((((.((((((((((((((((........)))))))))))))))).))))))))))))))))


SIMILARITIES
miRBase osa-MIR814a: 0.000000000000004

PMRD osa-miR814b: 1e-36

microPC miR1436: 0.0000000002
UniProt no hits

RFAM MIR1122: 2e-35

Identical with: osa-miR814b from PMRD (MNEST049060)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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evidence: cloned, Northern

references

[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"




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