ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR815
source: miRBase, original name: osa-MIR815b (MI0005243)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGGGGATTGAGGAGATTGGG miRNA* CAATCTTCTCTATTTCCTTCT mismatches: 3 bulges: 0 |
pre-miRNA
CTAATGGTTCACCTCGTTTTGCGTATATTCCCAATCTTCTCTATTTCCTTCTCCTCAAACACAGCCTGGGAGTGTTTGAGAAGGGGATTGAGGAGATTGG
GAAGATACGTAAAACGAGGTGAGCCATTAG
dot-bracket secondary structure
((((((((((((((((((((((((((.((((((((((((((.((..(((((((...((((((..(....).)))))))))))))..)).)))))))))))
))).))))))))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
CTAATGGTTCACCTCGTTTTGCGTATATTCCCAATCTTCTCTATTTCCTTCTCCTCAAACACAGCCTGGGAGTGTTTGAGAAGGGGATTGAGGAGATTGG
GAAGATACGTAAAACGAGGTGAGCCATTAG
dot-bracket secondary structure
((((((((((((((((((((((((((.((((((((((((((.((..(((((((...((((((..(....).)))))))))))))..)).)))))))))))
))).))))))))))))))))))))))))))
SIMILARITIES| miRBase osa-MIR815c: 0.00000003 PMRD osa-miR815b: 9e-70 microPC no hits | UniProt no hits RFAM MIR815: 2e-37 |
Identical with: osa-miR815b from PMRD (MNEST049063) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
