ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR816 (MI0005245)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGACATATTTTACTACAAC miRNA* AGTATTAGGATGTGTCACAT mismatches: 2 bulges: 0 |
pre-miRNA
ATGTGACATATTTTACTACAACGAATCTGGATATGACAGAGGTATGTTTAAATTCGTAGTATTAGGATGTGTCACAT
dot-bracket secondary structure
(((((((((((((((.(((.((((((.((((((((.(....))))))))).)))))).))).)))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
ATGTGACATATTTTACTACAACGAATCTGGATATGACAGAGGTATGTTTAAATTCGTAGTATTAGGATGTGTCACAT
dot-bracket secondary structure
(((((((((((((((.(((.((((((.((((((((.(....))))))))).)))))).))).)))))))))))))))
SIMILARITIES| miRBase osa-MIR1862g: 0.00005 PMRD osa-miR816: 2e-38 microPC miR1436: 0.00001 | UniProt no hits RFAM MIR1122: 0.00000002 |
Identical with: osa-miR816 from PMRD (MNEST049065) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
