ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR441
source: miRBase, original name: osa-MIR819b (MI0005253)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGTTATAAGACTTTCTAGC miRNA* TAGAAAGTCTTATAATATGAAA mismatches: 1 bulges: 0 |
pre-miRNA
GTAAGCTACTACCTCCGTTTCAGGTTATAAGACTTTCTAGCATTACCCACATTCATATAGATATTAATGAATCTAGACATACATATATGTCTAGATTCAT
TAACATATATATGAATGTTGATAATGCTAGAAAGTCTTATAATATGAAACGGAGGAAGTAGCTTAC
dot-bracket secondary structure
((((((((((.(((((((((((.((((((((((((((((((((((.(.(((((((((((.((.((((((((((((((((((....)))))))))))))))
))).)).))))))))))).).)))))))))))))))))))))).))))))))))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
GTAAGCTACTACCTCCGTTTCAGGTTATAAGACTTTCTAGCATTACCCACATTCATATAGATATTAATGAATCTAGACATACATATATGTCTAGATTCAT
TAACATATATATGAATGTTGATAATGCTAGAAAGTCTTATAATATGAAACGGAGGAAGTAGCTTAC
dot-bracket secondary structure
((((((((((.(((((((((((.((((((((((((((((((((((.(.(((((((((((.((.((((((((((((((((((....)))))))))))))))
))).)).))))))))))).).)))))))))))))))))))))).))))))))))).))))))))))
SIMILARITIES| miRBase osa-MIR819e: 7e-65 PMRD osa-miR819b: 4e-91 microPC miR819: 3e-30 | UniProt no hits RFAM MIR1122: 4e-48 |
Identical with: osa-miR819b from PMRD (MNEST049073) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
