ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR441
source: miRBase, original name: osa-MIR819i (MI0005260)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGTTATAAGACTTTCTAGC miRNA* TAGAAAATCTTATAATATGAAA mismatches: 2 bulges: 0 |
pre-miRNA
CCATGTAAATATCATTGCCACTCATTTACTACCTCCGTTTCAGGTTATAAGACTTTCTAGCATTGTCTACATTCGTATAGATATTAATGAATCTAGACAC
ATATATATGTTTAGATTCATTAACATCTATATGAATACGGGCAATGCTAGAAAATCTTATAATATGAAACGGAGGAAGTAATATTATTTATGTCATGG
dot-bracket secondary structure
(((((((((((..............(((((.(((((((((((.(((((((((.(((((((((((((((..((((((((((((.((((((((((((((((.
.......)))))))))))))))).))))))))))))..))))))))))))))).))))))))).))))))))))).)))))...))))))...)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
CCATGTAAATATCATTGCCACTCATTTACTACCTCCGTTTCAGGTTATAAGACTTTCTAGCATTGTCTACATTCGTATAGATATTAATGAATCTAGACAC
ATATATATGTTTAGATTCATTAACATCTATATGAATACGGGCAATGCTAGAAAATCTTATAATATGAAACGGAGGAAGTAATATTATTTATGTCATGG
dot-bracket secondary structure
(((((((((((..............(((((.(((((((((((.(((((((((.(((((((((((((((..((((((((((((.((((((((((((((((.
.......)))))))))))))))).))))))))))))..))))))))))))))).))))))))).))))))))))).)))))...))))))...)))))
SIMILARITIES| miRBase osa-MIR819j: 3e-58 PMRD osa-miR819i: 4e-110 microPC miR1132: 8e-28 | UniProt no hits RFAM MIR1122: 8e-47 |
Identical with: osa-miR819i from PMRD (MNEST049080) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
