ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR827
source: miRBase, original name: osa-MIR827b (MI0010568)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATGACCATCAGCAAACA miRNA* TTTTGTTGCTGGTCATCTAGCT mismatches: 1 bulges: 1 |
pre-miRNA
CCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCA
CGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGAG
dot-bracket secondary structure
.(((((((.(((((.((((.(((((((((((((((.(((((...((.((((....(((.........((((......)))).))).....)))).)))))
)).))))))))))))))).))))))))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
CCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCA
CGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGAG
dot-bracket secondary structure
.(((((((.(((((.((((.(((((((((((((((.(((((...((.((((....(((.........((((......)))).))).....)))).)))))
)).))))))))))))))).))))))))).)))))))..
SIMILARITIES| miRBase osa-MIR827a: 5e-62 PMRD osa-miR827b: 2e-74 microPC miR827: 0.000007 | UniProt no hits RFAM no hits |
Identical with: osa-miRf10281-akr from PMRD (MNEST049496) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
