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ABOUT THIS RECORD
ID:
MNEST042269
species:
Oryza sativa
miRNA family:
MIR1861
source:
miRBase, original name:
osa-MIR1861m
(
MI0008259
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGGTCTTGTGGCAAGAACTGAG
miRNA*
CGGTTCTTGTCACAAGACCGAG
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTGCATATTCTTAGGCC
CGGTCTTGTGGCAAGAACTGAG
TAGTTCGTTAACTCGTTACC
CGGTTCTTGTCACAAGACCGAG
TATATGAATATGCAA
dot-bracket secondary structure
.(((((((((....((.
((((((((((((((((((((.(
(((..((......)))))).
)))))))))))))))))))).)
)....))))))))).
SIMILARITIES
miRBase
osa-MIR1861k
:
1e-37
PMRD
osa-miR1861m
:
1e-49
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
osa-miR1861m
from PMRD (
MNEST049150
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C,
Genome Res. 18:1456-1465(2008).
,
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"