ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR1866 (MI0008267)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAATTCCTGTAAAATTCTTG miRNA* GGGATTTTGCGGGAATTTCACG mismatches: 1 bulges: 0 |
pre-miRNA
CTTTTGCACGGAGGGATTTTGCGGGAATTTCACGGGAATTGAGTTGATTCCTGAAATTCCTGTAAAATTCTTGTGTTCCAAAGGA
dot-bracket secondary structure
((((((.(((.(((((((((((((((((((((..((((((.....))))))))))))))))))))))))))).)))..)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
[2] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
CTTTTGCACGGAGGGATTTTGCGGGAATTTCACGGGAATTGAGTTGATTCCTGAAATTCCTGTAAAATTCTTGTGTTCCAAAGGA
dot-bracket secondary structure
((((((.(((.(((((((((((((((((((((..((((((.....))))))))))))))))))))))))))).)))..)))))).
SIMILARITIES| miRBase osa-MIR1866: 4e-43 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
[2] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
