ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR1868 (MI0008270)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACGGAAAACGAGGGAGCAGCCA miRNA* GCTACTTCCTCGTTTTCCGTAAAC mismatches: 3 bulges: 0 |
pre-miRNA
GGAAAGGCTTTGTAAAACACACTATTTGACAGTTTGGAAAGCGTGCTCACGGAAAACGAGGGAGCAGCCAAGGCATTGTTCTTACCGGTTTATGAATTGG
CTACTTCCTCGTTTTCCGTAAACACGCTTCCCGAGCTTCTAAACGGTGTGTTTCTTGCAAAAACTTTAT
dot-bracket secondary structure
..((((..((((((((((((((..((((..(((((((.(((((((...((((((((((((((((.((((((..(((...((.....))...)))..))))
)).))))))))))))))))...))))))).)))))))..))))..)))))))..)))))))..))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"
[2] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
GGAAAGGCTTTGTAAAACACACTATTTGACAGTTTGGAAAGCGTGCTCACGGAAAACGAGGGAGCAGCCAAGGCATTGTTCTTACCGGTTTATGAATTGG
CTACTTCCTCGTTTTCCGTAAACACGCTTCCCGAGCTTCTAAACGGTGTGTTTCTTGCAAAAACTTTAT
dot-bracket secondary structure
..((((..((((((((((((((..((((..(((((((.(((((((...((((((((((((((((.((((((..(((...((.....))...)))..))))
)).))))))))))))))))...))))))).)))))))..))))..)))))))..)))))))..))))..
SIMILARITIES| miRBase no hits PMRD osa-miR1868: 6e-93 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miRf10570-akr from PMRD (MNEST049785) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"
[2] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
