ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR1870 (MI0008273)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCTGAATTAGACCTAGTGGGCAT miRNA* GCCCTTTAGGGCTAATTCAGCATG mismatches: 2 bulges: 0 |
pre-miRNA
TAGTGTCAAAGTAATGGAGGATTTGGGAAATAAACTGCGTTCATGCTGAATTAGACCTAGTGGGCATTTATACATCACAACACATGGTACTGTTGCCCTT
TCCTTTTTCTAGCCTTAGTGTTGTGATCTATATATGCCCTTTAGGGCTAATTCAGCATGAACATAGTTTATTCTCCATTCCTCAAATCATCCATTACTTT
TGACACTTA
dot-bracket secondary structure
.(((((((((((((((((.((((((((((((((((((.((((((((((((((((.(((((.((((((.((((.((((((((((..((((....))))...
..((......)).....)))))))))).)))).)))))).))))).)))))))))))))))).))))))))......)))).)))))).)))))))).))
)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"
[2] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
TAGTGTCAAAGTAATGGAGGATTTGGGAAATAAACTGCGTTCATGCTGAATTAGACCTAGTGGGCATTTATACATCACAACACATGGTACTGTTGCCCTT
TCCTTTTTCTAGCCTTAGTGTTGTGATCTATATATGCCCTTTAGGGCTAATTCAGCATGAACATAGTTTATTCTCCATTCCTCAAATCATCCATTACTTT
TGACACTTA
dot-bracket secondary structure
.(((((((((((((((((.((((((((((((((((((.((((((((((((((((.(((((.((((((.((((.((((((((((..((((....))))...
..((......)).....)))))))))).)))).)))))).))))).)))))))))))))))).))))))))......)))).)))))).)))))))).))
)))))))..
SIMILARITIES| miRBase osa-MIR1870: 1e-116 PMRD osa-miR1870: 1e-116 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miRf10979-akr from PMRD (MNEST050194) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"
[2] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
