ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR1871 (MI0008274)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGGCTCTGATATCATGTTGGTTT miRNA* TCTAACATGGTATCGGATCCATAG mismatches: 2 bulges: 0 |
pre-miRNA
TAACAATGAATATATCTGTTGTTTCTCTCAAATCTAACATGGTATCGGATCCATAGGTGTAGCCATATCAATCTTAAAGCTATGGCTCTGATATCATGTT
GGTTTTGAAGGAAATGACTGATATATTTCATTGTA
dot-bracket secondary structure
..((((((((((((((.((..((((..(((((.((((((((((((((((.((((((.(...................).)))))).))))))))))))))
)).)))))..))))..)).)))))).)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
TAACAATGAATATATCTGTTGTTTCTCTCAAATCTAACATGGTATCGGATCCATAGGTGTAGCCATATCAATCTTAAAGCTATGGCTCTGATATCATGTT
GGTTTTGAAGGAAATGACTGATATATTTCATTGTA
dot-bracket secondary structure
..((((((((((((((.((..((((..(((((.((((((((((((((((.((((((.(...................).)))))).))))))))))))))
)).)))))..))))..)).)))))).)))))))).
SIMILARITIES| miRBase no hits PMRD osa-miR1871: 1e-72 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miR1871 from PMRD (MNEST049167) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
