ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR1874 (MI0008277)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGGCTACTACACCATCCATAAG miRNA* TATGGATGGAGGTGTAACCCGATG mismatches: 4 bulges: 2 |
pre-miRNA
CCATAATCATCTATTAGTACAGTGGTGAAGACATAGGGCTACTACACCATCCATAAGGGTTCGAATCTTCGATGTGCCTAGATAGGGTACAGTTGGATCC
CATATGGATGGAGGTGTAACCCGATGCCTTTTACAAATAGATGGTTATTTT
dot-bracket secondary structure
..(((((((((((((.(((.......((((.(((.(((.(((.((.(((((((((.((((((((........(((((((.....))))))).))))).))
).)))))))))..))))).))).))).))))))).)))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M, BMC Plant Biol. 8:123(2008)., "Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice"
[2] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
[3] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
CCATAATCATCTATTAGTACAGTGGTGAAGACATAGGGCTACTACACCATCCATAAGGGTTCGAATCTTCGATGTGCCTAGATAGGGTACAGTTGGATCC
CATATGGATGGAGGTGTAACCCGATGCCTTTTACAAATAGATGGTTATTTT
dot-bracket secondary structure
..(((((((((((((.(((.......((((.(((.(((.(((.((.(((((((((.((((((((........(((((((.....))))))).))))).))
).)))))))))..))))).))).))).))))))).)))))))))))))...
SIMILARITIES| miRBase osa-MIR1874: 3e-82 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M, BMC Plant Biol. 8:123(2008)., "Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice"
[2] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
[3] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
