ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1878
source: miRBase, original name: osa-MIR1878 (MI0008284)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTTAATCTGGACACTATAAAAGA miRNA* ATTTGTAGTGTTCAGATTGAGTTT mismatches: 3 bulges: 0 |
pre-miRNA
ACCACTGCAGACTTAATCTGGACACTATAAAAGAAAATTGTGCATGTGAAAATATGCCCATTATAAATTTGTAGTGTTCAGATTGAGTTTAGAATGGTTG
dot-bracket secondary structure
((((...((((((((((((((((((((((((.......((.((((((....)))))).)).......))))))))))))))))))))))).)..))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
ACCACTGCAGACTTAATCTGGACACTATAAAAGAAAATTGTGCATGTGAAAATATGCCCATTATAAATTTGTAGTGTTCAGATTGAGTTTAGAATGGTTG
dot-bracket secondary structure
((((...((((((((((((((((((((((((.......((.((((((....)))))).)).......))))))))))))))))))))))).)..))))..
SIMILARITIES| miRBase bdi-MIR1878: 0.000000000005 PMRD osa-miR1878: 5e-52 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miR1878 from PMRD (MNEST049175) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
