ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1882
source: miRBase, original name: osa-MIR1882e (MI0008292)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATTGCTTTCAAGGTCATTTCTT miRNA* GAAATGATCTTGGACGTAATCTAG mismatches: 3 bulges: 0 |
pre-miRNA
CCAATATCCTAGATTGCTTTCAAGGTCATTTCTTTAGGGAACCCCATTCCCATAAATTCAGTATCCAAAGCTGGTTGCTGTATCTATGGGAATAAGGGTT
CCCTTACGAAATGATCTTGGACGTAATCTAGGAGTTTGCTG
dot-bracket secondary structure
.(((..(((((((((((.((((((((((((((...(((((((((.(((((((((.((.(((((.(((....))).))))).)).)))))))))..)))))
))))...)))))))))))))).)))))))))))..)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
CCAATATCCTAGATTGCTTTCAAGGTCATTTCTTTAGGGAACCCCATTCCCATAAATTCAGTATCCAAAGCTGGTTGCTGTATCTATGGGAATAAGGGTT
CCCTTACGAAATGATCTTGGACGTAATCTAGGAGTTTGCTG
dot-bracket secondary structure
.(((..(((((((((((.((((((((((((((...(((((((((.(((((((((.((.(((((.(((....))).))))).)).)))))))))..)))))
))))...)))))))))))))).)))))))))))..)))...
SIMILARITIES| miRBase osa-MIR1317: 3e-76 PMRD osa-miR1882e: 3e-76 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-MIR1317 from miRBase (MNEST042191) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
