ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1883
source: miRBase, original name: osa-MIR1883b (MI0008301)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCTGTGACGGGCCGAGAATGGAA miRNA* CTACTTCCTGCCCATCACAGGTGA mismatches: 2 bulges: 2 |
pre-miRNA
CGGTTGCAGCCCGTCACAGGTATCTAGTCACCTGTGACGGGCCGAGAATGGAATCCGTCAAAGGAACACACCTTTGTCAGATTCTACTTCCTGCCCATCA
CAGGTGACTAGATACCTGTGACGGGCCGCAACTTAC
dot-bracket secondary structure
.((((((.(((((((((((((((((((((((((((((.((((.(.((((((((((.(.((((((......)))))).).))))))).)))).)))).)))
)))))))))))))))))))))))))).))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
CGGTTGCAGCCCGTCACAGGTATCTAGTCACCTGTGACGGGCCGAGAATGGAATCCGTCAAAGGAACACACCTTTGTCAGATTCTACTTCCTGCCCATCA
CAGGTGACTAGATACCTGTGACGGGCCGCAACTTAC
dot-bracket secondary structure
.((((((.(((((((((((((((((((((((((((((.((((.(.((((((((((.(.((((((......)))))).).))))))).)))).)))).)))
)))))))))))))))))))))))))).))))))...
SIMILARITIES| miRBase osa-MIR1883a: 8e-21 PMRD osa-miR1883b: 2e-73 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miR1883b from PMRD (MNEST049188) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
