ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR2091 (MI0010551)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATACATTGCCTCCTAGGCTTG miRNA* AGCCGAGGAGGAGGCCATGCGTGCG mismatches: 4 bulges: 3 |
pre-miRNA
GAGCTCAACCGAGCCGAGGAGGAGGCCATGCGTGCGGTGGCTGTGGAGAGCCTGCATACATTGCCTCCTAGGCTTGGCGGAGCAGC
dot-bracket secondary structure
..((((..(((((((....(((((((.(((..((((..((((......))))))))..))).))))))).)))))))..))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
GAGCTCAACCGAGCCGAGGAGGAGGCCATGCGTGCGGTGGCTGTGGAGAGCCTGCATACATTGCCTCCTAGGCTTGGCGGAGCAGC
dot-bracket secondary structure
..((((..(((((((....(((((((.(((..((((..((((......))))))))..))).))))))).)))))))..))))...
SIMILARITIES| miRBase osa-MIR2091: 1e-43 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
