ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR2106 (MI0010567)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGAGGTTTTCTGGATACATT miRNA* TGTTCCGAGAATCTCGTACGCC mismatches: 0 bulges: 5 |
pre-miRNA
TGCGAGAAGGATGTTCCGAGAATCTCGTACGCCGGTGAGGTTTCCCGTGATCTGGCCGAGGTTTTCTGGATACATTCAACGCGGAA
dot-bracket secondary structure
.(((....(((((((((((((((((((...(((((...((....)).....))))))))))))))).))).))))))..)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
TGCGAGAAGGATGTTCCGAGAATCTCGTACGCCGGTGAGGTTTCCCGTGATCTGGCCGAGGTTTTCTGGATACATTCAACGCGGAA
dot-bracket secondary structure
.(((....(((((((((((((((((((...(((((...((....)).....))))))))))))))).))).))))))..)))....
SIMILARITIES| miRBase no hits PMRD osa-miR2106: 1e-43 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miR2106 from PMRD (MNEST049196) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
