ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR2118
source: miRBase, original name: osa-MIR2118d (MI0011254)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCTGATGCCTCCCATGCCTA miRNA* GGCATGGGAACATGGAGGAAAG mismatches: 2 bulges: 2 |
pre-miRNA
GTGGATCAGGAAGAGGAAGAAAAGAGGGTCTGAGAGCGGTGGGCATGGGAACATGGAGGAAAGCCCAAACTCTTCTTCGCCTCTAGAACTAGGGGCTGAG
ATTTGGTTTCCTTGTTTTCCTGATGCCTCCCATGCCTATTGTTCTCAGATGCTCCTTCCTCTTCCTTTTGGTTCGC
dot-bracket secondary structure
(((((((((((((((((((....(((.(((((((((((((((((((((((.(((.(.(((((((..(((((..((((.(((((((....))))))).)))
)...)))))....)))))))).)))..))))))))))))))))))))))).))))))))))))))...))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
GTGGATCAGGAAGAGGAAGAAAAGAGGGTCTGAGAGCGGTGGGCATGGGAACATGGAGGAAAGCCCAAACTCTTCTTCGCCTCTAGAACTAGGGGCTGAG
ATTTGGTTTCCTTGTTTTCCTGATGCCTCCCATGCCTATTGTTCTCAGATGCTCCTTCCTCTTCCTTTTGGTTCGC
dot-bracket secondary structure
(((((((((((((((((((....(((.(((((((((((((((((((((((.(((.(.(((((((..(((((..((((.(((((((....))))))).)))
)...)))))....)))))))).)))..))))))))))))))))))))))).))))))))))))))...))))))))
SIMILARITIES| miRBase osa-MIR2118p: 3e-27 PMRD zma-miR2118d: 0.0000000000006 microPC no hits | UniProt no hits RFAM MIR2118: 1e-91 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
