ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR2118
source: miRBase, original name: osa-MIR2118r (MI0011268)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCCAATGCCTCCCATGCCTA miRNA* GGCATGGGAACATGGAGGA mismatches: 1 bulges: 3 |
pre-miRNA
GTGAGTCGGGAAGAGGAAGAAAAGAGGGTCTAAGAGCAGTGGGCATGGGAACATGGAGGAAGAACATGTACTTTTCTTCCCTCTAAATTTAGAGGTTGAG
ATTTGCTAAGCATTTTTCCCAATGCCTCCCATGCCTACAGTTCTTAGGTACTCCTTCCCCTTCCTGTTGGCTTGC
dot-bracket secondary structure
(..((((((((((.(((((....(((..(((((((((.((((((((((((.((((((((((......(((..((((...((((((....))))))..)))
)..)))......)))))))..)))..)))))))))))).)))))))))..)))))))).))))))...))))..)
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
GTGAGTCGGGAAGAGGAAGAAAAGAGGGTCTAAGAGCAGTGGGCATGGGAACATGGAGGAAGAACATGTACTTTTCTTCCCTCTAAATTTAGAGGTTGAG
ATTTGCTAAGCATTTTTCCCAATGCCTCCCATGCCTACAGTTCTTAGGTACTCCTTCCCCTTCCTGTTGGCTTGC
dot-bracket secondary structure
(..((((((((((.(((((....(((..(((((((((.((((((((((((.((((((((((......(((..((((...((((((....))))))..)))
)..)))......)))))))..)))..)))))))))))).)))))))))..)))))))).))))))...))))..)
SIMILARITIES| miRBase osa-MIR2118e: 9e-46 PMRD zma-miR2118c: 4e-17 microPC no hits | UniProt no hits RFAM MIR2118: 5e-91 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
