ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR2120 (MI0010708)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGATCTTTAGTCCCGGTTGTTC miRNA* ACAACCGGGACTAAAGATATCTTG mismatches: 5 bulges: 0 |
pre-miRNA
AACAACCGGGACTAAAGATATCTTGATATCTTTAACCGGGAGTAAAGAAAAGATCTTTAGTCCCGGTTGTTCT
dot-bracket secondary structure
(((((((((((((((((((.((((....((((.....))))...))))....)))))))))))))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Huang SQ, Peng J, Qiu CX, Yang ZM, J Inorg Biochem. 103:282-287(2009)., "Heavy metal-regulated new microRNAs from rice"
AACAACCGGGACTAAAGATATCTTGATATCTTTAACCGGGAGTAAAGAAAAGATCTTTAGTCCCGGTTGTTCT
dot-bracket secondary structure
(((((((((((((((((((.((((....((((.....))))...))))....)))))))))))))))))))..
SIMILARITIES| miRBase no hits PMRD osa-miRf11099-akr: 0.0000000000009 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Huang SQ, Peng J, Qiu CX, Yang ZM, J Inorg Biochem. 103:282-287(2009)., "Heavy metal-regulated new microRNAs from rice"
