ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR2121
source: miRBase, original name: osa-MIR2121a (MI0010709)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAACGGAGCGGTCCATTAGCGCG miRNA* TGCTAATCTATCGCTCCGTTTTCC mismatches: 3 bulges: 0 |
pre-miRNA
GTGCTAATCTATCGCTCCGTTTTCCGTGCGGAACACAGCCGCGGCCTTAGGCTGTGTTCCCATCTACCAGATGGGAACTCATTTCCCCTGCACGGAAAAC
GGAGCGGTCCATTAGCGCGT
dot-bracket secondary structure
((((((((..(((((((((((((((((((((...((((((.........))))))(((((((((.....))))))))).........)))))))))))))
))))))))..))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Huang SQ, Peng J, Qiu CX, Yang ZM, J Inorg Biochem. 103:282-287(2009)., "Heavy metal-regulated new microRNAs from rice"
GTGCTAATCTATCGCTCCGTTTTCCGTGCGGAACACAGCCGCGGCCTTAGGCTGTGTTCCCATCTACCAGATGGGAACTCATTTCCCCTGCACGGAAAAC
GGAGCGGTCCATTAGCGCGT
dot-bracket secondary structure
((((((((..(((((((((((((((((((((...((((((.........))))))(((((((((.....))))))))).........)))))))))))))
))))))))..))))))))..
SIMILARITIES| miRBase osa-MIR2121b: 0.00000000000003 PMRD osa-miRf10061-akr: 1e-62 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miRf10061-akr from PMRD (MNEST049276) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Huang SQ, Peng J, Qiu CX, Yang ZM, J Inorg Biochem. 103:282-287(2009)., "Heavy metal-regulated new microRNAs from rice"
