ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR2121
source: miRBase, original name: osa-MIR2121b (MI0010710)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAACGGAGCGGTCCATTAGCGCG miRNA* CGCTAATAAGTCGTTTCATTTTGC mismatches: 5 bulges: 0 |
pre-miRNA
GCGCTAATAAGTCGTTTCATTTTGCGTGCGTGAGAGTTTTCAAGAACCTCCTGTCTAACCAACCCAAAATTGGGTTGGCCACGTATAGTCCAAGGATGTG
TGTGTGAGATGCATTCATTTATGTGCGTTGGGAACTCATTCCCTCCGCACGGAAAACGGAGCGGTCCATTAGCGCGT
dot-bracket secondary structure
((((((((...(((((((.((((.((((((.(((((((..(((....(((........((((((((....)))))))).((((((((.((....))))))
)))).)))..((((........)))).)))..)))))......)))))))).)))).)))))))...))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Huang SQ, Peng J, Qiu CX, Yang ZM, J Inorg Biochem. 103:282-287(2009)., "Heavy metal-regulated new microRNAs from rice"
GCGCTAATAAGTCGTTTCATTTTGCGTGCGTGAGAGTTTTCAAGAACCTCCTGTCTAACCAACCCAAAATTGGGTTGGCCACGTATAGTCCAAGGATGTG
TGTGTGAGATGCATTCATTTATGTGCGTTGGGAACTCATTCCCTCCGCACGGAAAACGGAGCGGTCCATTAGCGCGT
dot-bracket secondary structure
((((((((...(((((((.((((.((((((.(((((((..(((....(((........((((((((....)))))))).((((((((.((....))))))
)))).)))..((((........)))).)))..)))))......)))))))).)))).)))))))...))))))))..
SIMILARITIES| miRBase osa-MIR2121a: 0.00000000000004 PMRD osa-miRf10061-akr: 0.0000000000006 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Huang SQ, Peng J, Qiu CX, Yang ZM, J Inorg Biochem. 103:282-287(2009)., "Heavy metal-regulated new microRNAs from rice"
