ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR806
source: miRBase, original name: osa-MIR2123b (MI0010713)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAAAAGTCAACGGTGTCAAAC miRNA* TTGACACCGTTGACTTTTTAGT mismatches: 1 bulges: 0 |
pre-miRNA
TTTGACACCGTTGACTTTTTAGTACATGTCTGACCGTTCGTCTTGTGAAATATGTAAAACTAGATGTGTACATGAAAATACATTTAACAAGGAATCAAAT
GATATGAAAAGAATAAATAATTACTTAAAATTTTTGAATAAGACGAATGGTCAAACACGTCCTAAAAAGTCAACGGTGTCAAACA
dot-bracket secondary structure
((((((((((((((((((((((.((.(((.(((((((((((((((((((((..((((...(((((((((........))))))))).......(((....
))).................)))).....)))))...)))))))))))))))).))).)).))))))))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Huang SQ, Peng J, Qiu CX, Yang ZM, J Inorg Biochem. 103:282-287(2009)., "Heavy metal-regulated new microRNAs from rice"
TTTGACACCGTTGACTTTTTAGTACATGTCTGACCGTTCGTCTTGTGAAATATGTAAAACTAGATGTGTACATGAAAATACATTTAACAAGGAATCAAAT
GATATGAAAAGAATAAATAATTACTTAAAATTTTTGAATAAGACGAATGGTCAAACACGTCCTAAAAAGTCAACGGTGTCAAACA
dot-bracket secondary structure
((((((((((((((((((((((.((.(((.(((((((((((((((((((((..((((...(((((((((........))))))))).......(((....
))).................)))).....)))))...)))))))))))))))).))).)).))))))))))))))))))))))..
SIMILARITIES| miRBase osa-MIR2123a: 3e-101 PMRD osa-miR806c: 3e-49 microPC miR806: 2e-34 | UniProt no hits RFAM MIR806: 3e-58 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Huang SQ, Peng J, Qiu CX, Yang ZM, J Inorg Biochem. 103:282-287(2009)., "Heavy metal-regulated new microRNAs from rice"
