miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST042370
species: Oryza sativa
miRNA family: MIR445
source: miRBase, original name: osa-MIR2124a (MI0010715)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTTTAAATGTGTGTCCGTATATT

miRNA*
 TGTTTGGACACATGCATGAAGCAT

mismatches: 5
bulges: 0
View larger
pre-miRNA
 ATGTTTGGACACATGCATGAAGCATTAAATGTGAAAAAATAAACCAATTGCACAGATTGCATGTAAATCGCGAGACGAATCTTTTGAGCCTAATTATACC
ATGATTTGACAATGTGGTGCTACAGTAAATATTTGCTAATGACGGATTAATTAGGCTTAATAAATTTGTCTCGCAGTTTACAGGCGGAATCTGTAATTTG
TTTTGTTATTAGTCTACGTTTAATACTTTAAATGTGTGTCCGTATATTT

dot-bracket secondary structure
((((.((((((((((..(((((.(((((((((((...((((((.(((.(..(((((((((.(((((((.(((((((((((...(((((((((((((..((
.(.(((.(..(((((..(((....))).)))))..).))).).))..)))))))))))))...))))))))))).))))))).))..))))))).).)))
.)))))).....)).))))))))).)))))..)))))))))).))))..


SIMILARITIES
miRBase osa-MIR2124e: 1e-85

PMRD osa-miR442: 7e-69

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Huang SQ, Peng J, Qiu CX, Yang ZM, J Inorg Biochem. 103:282-287(2009)., "Heavy metal-regulated new microRNAs from rice"



Liczniki na strone;