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ABOUT THIS RECORD

ID: MNEST042375
species: Oryza sativa
miRNA family: MIR445
source: miRBase, original name: osa-MIR2124f (MI0010720)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTTTAAATGTGTGTCCGTATATT

miRNA*

mismatches: 9
bulges: 4
View larger
pre-miRNA
 ACGTTTGAACACATGCATGGAGTATTAAATGTTGACGAAAAAATAACTACTTAAACAGTTTGCATGTAAATTGCGAGATGAATCTTTTAACTCTAATTGC
GCCATGATTTGATAATATGGTGTTACAGTAAACTTTTGCTAATGATAGATTAATTAGCCTTAACAAATTCGTCTCTTGGTTTACAGGCGGATCCTGCAAT
TTGTTTTGTTATTAGACTACGTTTAATACTTTAAATGTGTGTCCGTATATTC

dot-bracket secondary structure
(((.....((((((...(((((((((((((((.(.(.....((((((.....((((((.((((((((((((((.(((((((((.(.((((..((((((((
((((((.((....))))))))))...(((((....)))))...........))))))..)))).).))))))))).))))))))).........))))).
)))))).)))))).).).))))))))))))))).))))))...)))......


SIMILARITIES
miRBase osa-MIR2124c: 2e-57

PMRD osa-miR442: 9e-47

microPC no hits		UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Huang SQ, Peng J, Qiu CX, Yang ZM, J Inorg Biochem. 103:282-287(2009)., "Heavy metal-regulated new microRNAs from rice"



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