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ABOUT THIS RECORD
ID:
MNEST042378
species:
Oryza sativa
miRNA family:
MIR445
source:
miRBase, original name:
osa-MIR2124i
(
MI0010722
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACTTTAAATGTGTGTCCGTATATT
miRNA*
TGTTTAGACATATGTATGTAGTAT
mismatches:
6
bulges:
0
View larger
pre-miRNA
A
TGTTTAGACATATGTATGTAGTAT
TAAATATATGAAAAAGAAAATAATTACATAGATTGCGTGTAAATTGTGAAACGAATCTTTTAAGCCTAATTGCTC
CATGATCTGACAATGTGGTGCTACAGTAAACATTTGTTAATAATGGATTAATCAGGCTTAATAAATTCGCCTCGTAGTTTACAAGTGGAATCTGTAATTT
GTTTCGTTGTTAGCCTACGTTTAAT
ACTTTAAATGTGTGTCCGTATATT
C
dot-bracket secondary structure
(
(((...(((((((((.((.(((((
(((((...(((....((((..(((((((..((((.(.((((((((((((..(((((...((((((((.((((.((
(((....(((((((((..(((....))).))).))))))...))))).)))).))))))))...)))))..))))))))))))...).))))))))))).
.))))....)))......)))))))
))).)).)))))))))...)))).
.
SIMILARITIES
miRBase
osa-MIR2124g
:
4e-64
PMRD
osa-miR442
:
1e-58
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Huang SQ, Peng J, Qiu CX, Yang ZM,
J Inorg Biochem. 103:282-287(2009).
,
"Heavy metal-regulated new microRNAs from rice"