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ABOUT THIS RECORD

ID: MNEST042382
species: Oryza sativa
miRNA family: MIR811
source: miRBase, original name: osa-MIR2862 (MI0013024)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCAACAGCTTAGATTCGTCC

miRNA*
 ACGAATCTCAGCCGTTGGATT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 GTGAATCTCGACCCTCCAAAACAAATCCAACAGCTTAGATTCGTCCACGTCATCATGAGTAAAAATTTTATTCCCAGTAAAACTTTTACTCCAGGAATTT
TACTCCTAGTAAAATTTTTACTCCTGAGTAAATCTGCGAGTAAAATTTTTACTCGTGATGACGTGGACGAATCTCAGCCGTTGGATTTGTTTTGGAGGGC
CAAGATTCACCCTATGTCACC

dot-bracket secondary structure
((((((((.(.((((((((((((((((((((.(((.(((((((((((((((((((((((((((((((((((((.(((.......(((((((.((((((((
(((.....)))))))......))))))))))).))).))))))))))))))))))))))))))))))))))))).))).)))))))))))))))))))).
).))))))))...........


SIMILARITIES
miRBase osa-MIR811a: 8e-16

PMRD osa-miR2862: 8e-124

microPC no hits		UniProt no hits

RFAM MIR811: 1e-113

Identical with: osa-miR2862 from PMRD (MNEST049197)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"



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