ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR2863
source: miRBase, original name: osa-MIR2863a (MI0013025)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTCCCATTCTAGTTTAGCT miRNA* TTGAGCTAGAATGGGTCAATG mismatches: 1 bulges: 0 |
pre-miRNA
TGGGTACCCATTGTCCCATTCTAGTTTAGCTAAATGAACTACTACAGGGAGTAAATTCTATGGACCAGGAAAAGTGAGTTTTAGTTAATTTAGTTGAGCT
AGAATGGGTCAATGGGTACCT
dot-bracket secondary structure
.((((((((((((.(((((((((((((((((((((.(((((..((.((((.....))))....((........))..))..))))).)))))))))))))
)))))))).))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"
TGGGTACCCATTGTCCCATTCTAGTTTAGCTAAATGAACTACTACAGGGAGTAAATTCTATGGACCAGGAAAAGTGAGTTTTAGTTAATTTAGTTGAGCT
AGAATGGGTCAATGGGTACCT
dot-bracket secondary structure
.((((((((((((.(((((((((((((((((((((.(((((..((.((((.....))))....((........))..))..))))).)))))))))))))
)))))))).))))))))))))
SIMILARITIES| miRBase no hits PMRD osa-miR2863a: 2e-64 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miR2863a from PMRD (MNEST049198) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"
