ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR2863
source: miRBase, original name: osa-MIR2863b (MI0013033)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCGTTTATTTGGACTAGAGT miRNA* ACTAGTTCAACTAAATGAACT mismatches: 2 bulges: 0 |
pre-miRNA
TCTTTTACCCACACTAGTTCAACTAAATGAACTAAATTTCACTTTTAGAATCACAAAAAATGAAATGTAGTTCGTTTATTTGGACTAGAGTGGGTCAATT
A
dot-bracket secondary structure
......((((((.(((((((((.(((((((((((.((((((.((((.(.....).)))).)))))).))))))))))).))))))))).)))))).....
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"
TCTTTTACCCACACTAGTTCAACTAAATGAACTAAATTTCACTTTTAGAATCACAAAAAATGAAATGTAGTTCGTTTATTTGGACTAGAGTGGGTCAATT
A
dot-bracket secondary structure
......((((((.(((((((((.(((((((((((.((((((.((((.(.....).)))).)))))).))))))))))).))))))))).)))))).....
.
SIMILARITIES| miRBase no hits PMRD osa-miR2863b: 1e-52 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miR2863b from PMRD (MNEST049199) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"
