ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR156
source: miRBase, original name: sof-MIR156 (MI0001754)
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTCTCTGTCAGC mismatches: 0 bulges: 2 |
pre-miRNA
GGTGGAGAAGAGGTGGAGGCTGACAGAAGAGAGTGAGCACACATGGTGCCTTTCTTGCATGATGAACGATCGAGAGGTTCATGCTCGAAGCTATGCGTGC
TCACTTCTCTCTCTGTCAGCCGTTAGAACTCTCTCTC
dot-bracket secondary structure
...(((((.(((.....(((((((((((((((((((((((.((((((....(((..((((((......(((....)))))))))..))))))))).))))
)))).))))).)))))))))).......)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GGTGGAGAAGAGGTGGAGGCTGACAGAAGAGAGTGAGCACACATGGTGCCTTTCTTGCATGATGAACGATCGAGAGGTTCATGCTCGAAGCTATGCGTGC
TCACTTCTCTCTCTGTCAGCCGTTAGAACTCTCTCTC
dot-bracket secondary structure
...(((((.(((.....(((((((((((((((((((((((.((((((....(((..((((((......(((....)))))))))..))))))))).))))
)))).))))).)))))))))).......)))))))).
SIMILARITIES| miRBase ssp-MIR156: 2e-64 PMRD zma-miR156c: 2e-49 microPC miR156: 1e-50 | UniProt no hits RFAM mir-156: 2e-22 |
Identical with: miR156 from microPC (MNEST046719) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
