ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR159
source: miRBase, original name: sof-MIR159a (MI0001756)
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTG miRNA* GAGCTCCTATCATTCCAATGA mismatches: 3 bulges: 0 |
pre-miRNA
CCTGATGCTTGGATTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTTGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTC
ATCATGTATGTGTGTATGTATTTTCGAGAGGGAGGAGAGGAGCTAGACTCTCATGGTGGTCGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAGC
TGCACCGTCCCCTTGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCCTGATCCATCCATCC
dot-bracket secondary structure
...((((..((((((.((.(((((((((((.(((.(((((.((..((((((....(((((..((.(.(((.((((.(((((....((((...((((((((
(..((((((....))))))......((((.((..(((((........))))).......)).)))))))))))))...))))....))))).)))).)))
.).))....))))))).))))..)).))))).))).))))))))))).))..))))))..)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CCTGATGCTTGGATTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTTGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTC
ATCATGTATGTGTGTATGTATTTTCGAGAGGGAGGAGAGGAGCTAGACTCTCATGGTGGTCGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAGC
TGCACCGTCCCCTTGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCCTGATCCATCCATCC
dot-bracket secondary structure
...((((..((((((.((.(((((((((((.(((.(((((.((..((((((....(((((..((.(.(((.((((.(((((....((((...((((((((
(..((((((....))))))......((((.((..(((((........))))).......)).)))))))))))))...))))....))))).)))).)))
.).))....))))))).))))..)).))))).))).))))))))))).))..))))))..)))).
SIMILARITIES| miRBase ssp-MIR159a: 1e-147 PMRD sof-miR159a: 5e-150 microPC miR319: 2e-23 | UniProt no hits RFAM MIR159: 4e-74 |
Identical with: ssp-MIR159a from miRBase (MNEST042468) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
