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ABOUT THIS RECORD

ID: MNEST042454
species: Saccharum officinarum
miRNA family: MIR159
source: miRBase, original name: sof-MIR159c (MI0001760)

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTGGATTGAAGGGAGCTCCT

miRNA*
GAGCTCCCTTCGATCCAATCC

mismatches: 3
bulges: 0

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pre-miRNA
TGAAGACGACGACGAAGAAGAAGATGGCGAAGAAAAGTGATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTC
ATGGATGCCTCTCTGGTGCAGCAATGACTAATGCTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCATCATCTTTCCCTCGTGCT
TGGATTGAAGGGAGCTCCT
CTCTCTTTCCTCTCTCTCT


dot-bracket secondary structure
...(((.((.((.(((..(((.(((.((........)).)))...((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.((
(((.((((((....(((((((...((((....).))).))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).)
)))))))))))))))))..
.)))..))).)))))))..



SIMILARITIES
miRBase sbi-MIR159b: 6e-100

PMRD sof-miR159c: 1e-119

microPC miR319: 6e-94
UniProt no hits

RFAM MIR159: 3e-90

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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