miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST042457
species: Saccharum officinarum
miRNA family: MIR167
source: miRBase, original name: sof-MIR167a (MI0001761)

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG

miRNA*
GGTCATGCTGTAGTTTCATC

mismatches: 0
bulges: 1

View larger
pre-miRNA
AGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACCG
ATCCATGAATCCAGGATGAGGGGAGGGAAGAAAGAGGGATAATGAGCATCAGGTCATGCTGTAGTTTCATCTGCTGGTGGGAGCACAT


dot-bracket secondary structure
....((((.((((.(((.(((((((((((.((((((((((((((((.((((((....)))))).)).......(((((..(((((((((...((((...(
((......)))...)))).)))))))))....))))).........))))))))))))))))))))))))).))).))))..))))..



SIMILARITIES
miRBase sof-MIR167b: 8e-102

PMRD sof-miR167a: 3e-104

microPC miR167: 6e-81
UniProt no hits

RFAM MIR167_1: 4e-30

Identical with: sof-miR167a from PMRD (MNEST054634)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




Liczniki na strone;