ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR167
source: miRBase, original name: sof-MIR167b (MI0001762)
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GGTCATGCTGTAGTTTCATC mismatches: 0 bulges: 1 |
pre-miRNA
AGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACGG
ATCCATGAATCCAGGATGAGGGGAGGGAAGAAAGAGGGATAATGAGCATCAGGTCATGCTGTAGTTTCATCTGCTGGTGGGAGCACAT
dot-bracket secondary structure
....((((.((((.(((.(((((((((((.((((((((((((((((.((((((....)))))).)).......(((((..(((((((((...((((..((
((......))))..)))).)))))))))....))))).........))))))))))))))))))))))))).))).))))..))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACGG
ATCCATGAATCCAGGATGAGGGGAGGGAAGAAAGAGGGATAATGAGCATCAGGTCATGCTGTAGTTTCATCTGCTGGTGGGAGCACAT
dot-bracket secondary structure
....((((.((((.(((.(((((((((((.((((((((((((((((.((((((....)))))).)).......(((((..(((((((((...((((..((
((......))))..)))).)))))))))....))))).........))))))))))))))))))))))))).))).))))..))))..
SIMILARITIES| miRBase sof-MIR167a: 8e-102 PMRD sof-miR167b: 3e-104 microPC miR167: 1e-78 | UniProt no hits RFAM MIR167_1: 2e-32 |
Identical with: sof-miR167b from PMRD (MNEST054635) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
