ABOUT THIS RECORDspecies: Saccharum spp.
miRNA family: MIR167
source: miRBase, original name: ssp-MIR167b (MI0018193)
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GGTCATGCTGTAGTTTCATC mismatches: 0 bulges: 1 |
pre-miRNA
GGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACGGATCGATGAATCCAGGATG
AGGGGAGGGAATAATGAGCATCAGGTCATGCTGTAGTTTCATC
dot-bracket secondary structure
(((((((((((.((((((((((((((..((((.((((.(.....).))))...)))).....(((((((((...((((..((((......))))..))))
.)))))))))........)))))))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT, BMC Plant Biol. 10:260(2010)., "Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane"
GGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACGGATCGATGAATCCAGGATG
AGGGGAGGGAATAATGAGCATCAGGTCATGCTGTAGTTTCATC
dot-bracket secondary structure
(((((((((((.((((((((((((((..((((.((((.(.....).))))...)))).....(((((((((...((((..((((......))))..))))
.)))))))))........)))))))))))))))))))))))))
SIMILARITIES| miRBase sof-MIR167b: 3e-60 PMRD ssp-miR167: 4e-75 microPC miR167: 1e-72 | UniProt no hits RFAM MIR167_1: 0.000000000002 |
Identical with: ssp-miR167 from PMRD (MNEST054654) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT, BMC Plant Biol. 10:260(2010)., "Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane"
