ABOUT THIS RECORDspecies: Saccharum spp.
miRNA family: MIR827
source: miRBase, original name: ssp-MIR827 (MI0018181)
SEQUENCE & STRUCTURE| miRNA TTAGATGACCATCAGCAAACA miRNA* TTTTGTTGGTGGTCATTTAACC mismatches: 0 bulges: 1 |
pre-miRNA
ACCTGTTTTGTTGGTGGTCATTTAACCATGCTTCCATCGATGGGTGCATGGTTTATGGCAGAGTGTGATGCCATGAACTCATCATGGTCATGCATGTGTG
CATGGTTAGATGACCATCAGCAAACATGTT
dot-bracket secondary structure
((.(((((.((((((((((((((((((((((..((((.(((((((.((((((..((.((.....)).)))))))).))))))))))).(((....))).)
)))))))))))))))))))))))))).)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT, BMC Plant Biol. 10:260(2010)., "Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane"
ACCTGTTTTGTTGGTGGTCATTTAACCATGCTTCCATCGATGGGTGCATGGTTTATGGCAGAGTGTGATGCCATGAACTCATCATGGTCATGCATGTGTG
CATGGTTAGATGACCATCAGCAAACATGTT
dot-bracket secondary structure
((.(((((.((((((((((((((((((((((..((((.(((((((.((((((..((.((.....)).)))))))).))))))))))).(((....))).)
)))))))))))))))))))))))))).)).
SIMILARITIES| miRBase zma-MIR827: 0.0000000004 PMRD osa-miR827b: 0.000002 microPC miR827: 2e-64 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT, BMC Plant Biol. 10:260(2010)., "Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane"
