ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR156
source: miRBase, original name: sbi-MIR156d (MI0001548)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCACA miRNA* TGCTCTCTGCTCTCACTGTCATC mismatches: 1 bulges: 2 |
pre-miRNA
TGGACCTCTGGAGTGAGTGATGACAGAAGAGAGAGAGCACAACCCAGCACCAGCGAGGAGAAGCCTCGCTTCTGCGAGGGCCGTGTGCTCTCTGCTCTCA
CTGTCATCGCCGACAGGCCACCCAA
dot-bracket secondary structure
(((...((((...((.((((((((((.((((((((((((((.(((.(((..(((((((.....)))))))..)))..)))...)))))))))).))))..
)))))))))))).))))....))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TGGACCTCTGGAGTGAGTGATGACAGAAGAGAGAGAGCACAACCCAGCACCAGCGAGGAGAAGCCTCGCTTCTGCGAGGGCCGTGTGCTCTCTGCTCTCA
CTGTCATCGCCGACAGGCCACCCAA
dot-bracket secondary structure
(((...((((...((.((((((((((.((((((((((((((.(((.(((..(((((((.....)))))))..)))..)))...)))))))))).))))..
)))))))))))).))))....))).
SIMILARITIES| miRBase zma-MIR156j: 2e-49 PMRD sbi-miR156d: 8e-67 microPC miR157: 0.0000004 | UniProt no hits RFAM mir-156: 2e-43 |
Identical with: sbi-miR156d from PMRD (MNEST054396) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
