ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR164
source: miRBase, original name: sbi-MIR164d (MI0010865)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CACGTGTTCTCCTTCTCCAT mismatches: 2 bulges: 0 |
pre-miRNA
TGGAGAAGCAGGGCACGTGCATGCTCCTAACTTCTCGCGCGCTCCTCTCCGCCGAGATCCATCGTTCATCTATATCTCCATGGATATGGAGCTATATATG
GACTGGATCGCGGAGAGAAAGCTAGCTAGTATACTGCACGCACGTGTTCTCCTTCTCCAT
dot-bracket secondary structure
((((((((.(((((((((((.(((.....(((....((..(((.((((((((...((((((..((((((.((((.((((((....)))))).)))).)))
)))))))))))))))))..)))..)).))).....))).))))))))))).)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
TGGAGAAGCAGGGCACGTGCATGCTCCTAACTTCTCGCGCGCTCCTCTCCGCCGAGATCCATCGTTCATCTATATCTCCATGGATATGGAGCTATATATG
GACTGGATCGCGGAGAGAAAGCTAGCTAGTATACTGCACGCACGTGTTCTCCTTCTCCAT
dot-bracket secondary structure
((((((((.(((((((((((.(((.....(((....((..(((.((((((((...((((((..((((((.((((.((((((....)))))).)))).)))
)))))))))))))))))..)))..)).))).....))).))))))))))).)))))))).
SIMILARITIES| miRBase zma-MIR164a: 0.0000005 PMRD sbi-miR164d: 1e-87 microPC miR164: 0.00003 | UniProt no hits RFAM MIR164: 3e-86 |
Identical with: sbi-miR164d from PMRD (MNEST054413) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
