ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR166
source: miRBase, original name: sbi-MIR166a (MI0001500)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGTTCAAGG mismatches: 4 bulges: 0 |
pre-miRNA
GTGGAATGTTGTCTGGTTCAAGGTCTCGCTTGTGATTTAAGGATGATTTGTGCATGCGTAATTTTTATTCCTTGAATCTATGAGATCTCGGACCAGGCTT
CATTCCCC
dot-bracket secondary structure
..((((((..(((((((((.((((((((.....(((((((((((((....(((....)))....))).))))))))))..)))))))).)))))))))..
))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[3] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"
GTGGAATGTTGTCTGGTTCAAGGTCTCGCTTGTGATTTAAGGATGATTTGTGCATGCGTAATTTTTATTCCTTGAATCTATGAGATCTCGGACCAGGCTT
CATTCCCC
dot-bracket secondary structure
..((((((..(((((((((.((((((((.....(((((((((((((....(((....)))....))).))))))))))..)))))))).)))))))))..
))))))..
SIMILARITIES| miRBase bdi-MIR166c: 0.000000005 PMRD sbi-miR166a: 1e-56 microPC miR166: 6e-55 | UniProt no hits RFAM mir-166: 2e-55 |
Identical with: miR166 from microPC (MNEST046652) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[3] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"
