ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR166
source: miRBase, original name: sbi-MIR166e (MI0001550)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCAATCCCT miRNA* GGGTTGTTGTCTGGTTCAAGG mismatches: 4 bulges: 0 |
pre-miRNA
CAAGTTGAAGGTTAGGTTAATGGGGTTGTTGTCTGGTTCAAGGTCGCCACAGCAGACAAAGCCCATTTTGCTTAGCATGCAGCATGGGTTTATCTCTATT
GATGATCGATCTCGGACCAGGCTTCAATCCCTTTAACTAGCATCTGCATAT
dot-bracket secondary structure
...((.((..(((((.((((.(((((((..(((((((((.((((((.(((((.(((..((((((((.((((.......)))).))))))))...))).))
).))..)))))).)))))))))..))))))).))))))))).)).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CAAGTTGAAGGTTAGGTTAATGGGGTTGTTGTCTGGTTCAAGGTCGCCACAGCAGACAAAGCCCATTTTGCTTAGCATGCAGCATGGGTTTATCTCTATT
GATGATCGATCTCGGACCAGGCTTCAATCCCTTTAACTAGCATCTGCATAT
dot-bracket secondary structure
...((.((..(((((.((((.(((((((..(((((((((.((((((.(((((.(((..((((((((.((((.......)))).))))))))...))).))
).))..)))))).)))))))))..))))))).))))))))).)).))....
SIMILARITIES| miRBase zma-MIR166j: 5e-16 PMRD sbi-miR166e: 3e-82 microPC miR166: 0.0000005 | UniProt no hits RFAM mir-166: 1e-63 |
Identical with: sbi-miR166e from PMRD (MNEST054420) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
