ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR166
source: miRBase, original name: sbi-MIR166j (MI0010869)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGTTCTAGG mismatches: 4 bulges: 0 |
pre-miRNA
TGTGGAATGTTGTCTGGTTCTAGGCCTCTCTCTACATGCAAGCATGGATGTAGTAGCAGCCTACTGCAATTGCTTGCTGGGACCTCGGACCAGGCTTCAT
TCCCCTCA
dot-bracket secondary structure
...((((((..(((((((((.((((((..........(((((((....((((((((....))))))))..))))))).))).))).)))))))))..)))
))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
TGTGGAATGTTGTCTGGTTCTAGGCCTCTCTCTACATGCAAGCATGGATGTAGTAGCAGCCTACTGCAATTGCTTGCTGGGACCTCGGACCAGGCTTCAT
TCCCCTCA
dot-bracket secondary structure
...((((((..(((((((((.((((((..........(((((((....((((((((....))))))))..))))))).))).))).)))))))))..)))
))).....
SIMILARITIES| miRBase osa-MIR166a: 0.00000002 PMRD sbi-miR166j: 1e-56 microPC miR166: 0.000005 | UniProt no hits RFAM mir-166: 2e-55 |
Identical with: sbi-miR166j from PMRD (MNEST054425) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
