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ABOUT THIS RECORD

ID: MNEST042519
species: Sorghum bicolor
miRNA family: MIR167
source: miRBase, original name: sbi-MIR167a (MI0001513)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTA

miRNA*
GGTCATGCTGCGGCAGCCTCA

mismatches: 2
bulges: 2

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pre-miRNA
TGAAGCTGCCAGCATGATCTAGCTCTGAGTGATCACCCGAGAAGAACAATAGTTCGAGGTGGTCTCGCCTTGCTAGGTCATGCTGCGGCAGCCTCA

dot-bracket secondary structure
.((.(((((((((((((((((((.....(.(((((((((((...........)))).))))))).).....)))))))))))))..)))))).)).


SIMILARITIES
miRBase zma-MIR167d: 2e-33

PMRD sbi-miR167a: 1e-49

microPC miR167: 0.000001
UniProt no hits

RFAM MIR167_1: 2e-48

Identical with: sbi-miR167a from PMRD (MNEST054427)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"




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