ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR167
source: miRBase, original name: sbi-MIR167f (MI0001552)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCGTCTGGCAGTTTCATC mismatches: 0 bulges: 1 |
pre-miRNA
TCCGGTGCACTAGAGGTGGATGAAGCTGCCAGCATGATCTGAGAAACTAGTGCTTGATCCTTTTACTGATTTCCATCTAGCCTGCATCTATATATATACC
TTGATGCATGAATCATGGTCTGATGATAGTTAAGCGAGATCAGATCGTCTGGCAGTTTCATCTTCTTATGGCAGCACAA
dot-bracket secondary structure
....((((.(((.(((.(((((((((((((((.(((((((((........((((((((.(.......).....((((..(((((((((............
..))))))........)))..))))...))))))))...)))))))))))))))))))))))).))).)))..))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TCCGGTGCACTAGAGGTGGATGAAGCTGCCAGCATGATCTGAGAAACTAGTGCTTGATCCTTTTACTGATTTCCATCTAGCCTGCATCTATATATATACC
TTGATGCATGAATCATGGTCTGATGATAGTTAAGCGAGATCAGATCGTCTGGCAGTTTCATCTTCTTATGGCAGCACAA
dot-bracket secondary structure
....((((.(((.(((.(((((((((((((((.(((((((((........((((((((.(.......).....((((..(((((((((............
..))))))........)))..))))...))))))))...)))))))))))))))))))))))).))).)))..))))..
SIMILARITIES| miRBase osa-MIR167f: 0.00000004 PMRD sbi-miR167f: 7e-99 microPC miR167: 0.000009 | UniProt no hits RFAM MIR167_1: 3e-89 |
Identical with: sbi-miR167f from PMRD (MNEST054432) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
