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ABOUT THIS RECORD

ID: MNEST042524
species: Sorghum bicolor
miRNA family: MIR167
source: miRBase, original name: sbi-MIR167f (MI0001552)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG

miRNA*
GATCGTCTGGCAGTTTCATC

mismatches: 0
bulges: 1

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pre-miRNA
TCCGGTGCACTAGAGGTGGATGAAGCTGCCAGCATGATCTGAGAAACTAGTGCTTGATCCTTTTACTGATTTCCATCTAGCCTGCATCTATATATATACC
TTGATGCATGAATCATGGTCTGATGATAGTTAAGCGAGATCAGATCGTCTGGCAGTTTCATCTTCTTATGGCAGCACAA


dot-bracket secondary structure
....((((.(((.(((.(((((((((((((((.(((((((((........((((((((.(.......).....((((..(((((((((............
..))))))........)))..))))...))))))))...)))))))))))))))))))))))).))).)))..))))..



SIMILARITIES
miRBase osa-MIR167f: 0.00000004

PMRD sbi-miR167f: 7e-99

microPC miR167: 0.000009
UniProt no hits

RFAM MIR167_1: 3e-89

Identical with: sbi-miR167f from PMRD (MNEST054432)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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