ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR167
source: miRBase, original name: sbi-MIR167i (MI0010872)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGCATGACAGCCTCATT mismatches: 2 bulges: 1 |
pre-miRNA
AGTGAAGCTGCCAGCATGATCTAGCTTTGGTTGGCACCATTGGCAGGCGCCCACACAGTGGCCTCTTCCGTGTGTGTAGTGCCGCTCTGTACCTGCAAAT
CATTGTTAGATCATGCATGACAGCCTCATTTC
dot-bracket secondary structure
(((((.((((.((((((((((((((..(((((.(((..((.(((.(((((.((((((.(((......)))))))))..))))))))..))...))).)))
))..)))))))))))).)).)))).)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
AGTGAAGCTGCCAGCATGATCTAGCTTTGGTTGGCACCATTGGCAGGCGCCCACACAGTGGCCTCTTCCGTGTGTGTAGTGCCGCTCTGTACCTGCAAAT
CATTGTTAGATCATGCATGACAGCCTCATTTC
dot-bracket secondary structure
(((((.((((.((((((((((((((..(((((.(((..((.(((.(((((.((((((.(((......)))))))))..))))))))..))...))).)))
))..)))))))))))).)).)))).)))))..
SIMILARITIES| miRBase zma-MIR167a: 0.0000000000001 PMRD sbi-miR167i: 6e-71 microPC miR167: 0.0000000004 | UniProt no hits RFAM MIR167_1: 1e-69 |
Identical with: sbi-miR167i from PMRD (MNEST054435) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
