ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR168
source: miRBase, original name: sbi-MIR168 (MI0001556)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGATCGGGAC miRNA* CCCGCCTTGCACCAAGTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
GCCGCCGCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCTGCCGCCGTGCTCGGACGGGACAGATCCCGCCTTGCACCAAGTGAATCCGAGCCGGAG
CAGCCG
dot-bracket secondary structure
...((.((.(((.(((((..(((((((((((((..(((((.(((((((((....))).)))..))).)))))..)))))))))))))..))))).))).)
).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GCCGCCGCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCTGCCGCCGTGCTCGGACGGGACAGATCCCGCCTTGCACCAAGTGAATCCGAGCCGGAG
CAGCCG
dot-bracket secondary structure
...((.((.(((.(((((..(((((((((((((..(((((.(((((((((....))).)))..))).)))))..)))))))))))))..))))).))).)
).))..
SIMILARITIES| miRBase sof-MIR168a: 1e-31 PMRD sbi-miR168: 2e-55 microPC miR168: 3e-32 | UniProt no hits RFAM MIR168: 4e-53 |
Identical with: miR168 from microPC (MNEST044880) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
