ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: miRBase, original name: sbi-MIR169d (MI0001558)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* mismatches: 2 bulges: 89 |
pre-miRNA
GTGGCGAGAGCCTGCCTTTGGTAGCCAAGGATGACTTGCCTACATGGCATTGCGAGTTCCGGTTGCATGGCCAGTTCAGCTGAGTTTGTGGGCGGTCACCT
TGG
dot-bracket secondary structure
).(((....))).(((...)))..((((((.(((((.(((((((.(((..(((((.......)))))..)))..(((....)))..)))))))))))))))
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GTGGCGAGAGCCTGCCTTTGGTAGCCAAGGATGACTTGCCTACATGGCATTGCGAGTTCCGGTTGCATGGCCAGTTCAGCTGAGTTTGTGGGCGGTCACCT
TGG
dot-bracket secondary structure
).(((....))).(((...)))..((((((.(((((.(((((((.(((..(((((.......)))))..)))..(((....)))..)))))))))))))))
)))
SIMILARITIES| miRBase sbi-MIR169c: 3.0E-44 PMRD sbi-miR169d: 9.0E-54 microPC miR169: 2.0E-5 | UniProt no hits RFAM 5MIR169_5: 2.0E-52 |
Identical with: sbi-miR169d from PMRD (MNEST054440) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
